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Trees as Python objects

Load, create, traverse, search, prune, or modify hierarchical tree structures with ease using the ETE Python API.

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Programmatic tree visualization

Get full control of your tree images. Browse them interatively or render SVG, PNG of PDF images.

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Tree annotation

Custom node attributes can be rendered as graphical elements. Choose among external images, charts, symbols, text labels, and more!

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Jupyter notebook support

Prototype your methods using the Jupyter notebook framework including inline visualization of trees.

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Tools overview Cookbook


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Automated reconstruction of gene and species trees.

Run phylogenetic workflows with ease.

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Test evolutionary hypotheses

You can run CodeML and SLR easly using ETE, as well as visualizing results.

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Annotate trees with taxonomic data.

Use the NCBI taxonomy database to perform queries efficiently or to annotate your trees.

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Visualize trees and sequence alignments

Choose among detailed view, block-based, domain-based or condensed alignment formats.

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Compare tree topologies

You can estimate distances between gene and species trees of a different size and with duplicated events.

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Summarize phylogenetic signal

You can summarize phylogentic signal from multiple gene trees into a single species tree.

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